HPMV: Map Genome Coordinates to Protein Mutations (for Cartoons)

This form is for variant files that have been filtered down to a relatively small number of variants to be viewed as cartoons. To map large numbers of variants, use the separate mapping utility.

Upload genome coordinates file:


Detailed Settings

Input:
The coordinates are relative to
The input values/columns are separated by
Column of the input is the chromosome/contig (CHROM)
Column of the input is the position (POS) along the chromosome/contig
Column of the input is the reference (REF) nucleotide/sequence
Column of the input is the alternate (ALT) nucleotide/sequence
The reference (REF) and alternate (ALT) sequences are in the direction
The input file is
Output:
Coalesce mutations in the same protein into a single line/record