HPMV: Map Genome Coordinates to Protein Mutations (Raw Output)

This form is for raw mapping output. Use the other form to generate cartoons.

Upload genome coordinates file:


Detailed Settings

Input:
The coordinates are relative to
The input values/columns are separated by
Column of the input is the chromosome/contig (CHROM)
Column of the input is the position (POS) along the chromosome/contig
Column of the input is the reference (REF) nucleotide/sequence
Column of the input is the alternate (ALT) nucleotide/sequence
The reference (REF) and alternate (ALT) sequences are in the direction
The input file is
Output:
Include all mappings, or only best, along with mapping-type:
Include the genome coordinate input lines with the mappings:
Return the mapping output in format.